connectomicslab / connectomemapper3

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
https://connectome-mapper-3.readthedocs.io
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ENH: Integrate EEG pipeline in the BIDS App #201

Closed sebastientourbier closed 2 years ago

sebastientourbier commented 2 years ago

This PR integrate the EEG pipeline in the main workflow of the BIDS App.

Please check the following related issue for more details:

codecov[bot] commented 2 years ago

Codecov Report

Merging #201 (99da9bf) into release/v3.1.0 (414a978) will increase coverage by 2.72%. The diff coverage is 76.36%.

@@                Coverage Diff                 @@
##           release/v3.1.0     #201      +/-   ##
==================================================
+ Coverage           72.14%   74.86%   +2.72%     
==================================================
  Files                  36       42       +6     
  Lines                7963     8682     +719     
==================================================
+ Hits                 5745     6500     +755     
+ Misses               2218     2182      -36     
Impacted Files Coverage Δ
cmp/pipelines/common.py 97.72% <ø> (+29.54%) :arrow_up:
cmp/stages/connectome/connectome.py 100.00% <ø> (ø)
cmp/stages/connectome/fmri_connectome.py 100.00% <ø> (ø)
cmp/stages/diffusion/diffusion.py 62.96% <ø> (-1.75%) :arrow_down:
cmp/stages/functional/functionalMRI.py 91.66% <ø> (+8.80%) :arrow_up:
cmp/stages/parcellation/parcellation.py 88.76% <ø> (-0.71%) :arrow_down:
cmp/stages/preprocessing/fmri_preprocessing.py 73.43% <ø> (+3.99%) :arrow_up:
cmp/stages/preprocessing/preprocessing.py 85.71% <ø> (+1.13%) :arrow_up:
cmp/stages/registration/registration.py 89.93% <ø> (+0.68%) :arrow_up:
cmp/stages/segmentation/segmentation.py 66.46% <ø> (-0.80%) :arrow_down:
... and 27 more

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