Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
This would consists of:
docs/images/flowchart_bidsapp.png
with EEG pipeline.docs/index.rst
and README note about EEG pipeline.docs/cmpbids.rst
for an example dataset with EEG.docs/usage.rst
.docs/cmpbidsappmanager.rst
with screenshots and description of the configuration of each stage.docs/outputs.rst
with the list of "EEG Derivatives" produced by CMP3.(- Add a note with link to the EEG pipeline notebook. For instance, it could be in
docs/usage.rst
and/ordocs/cmpbidsappmanager.rst
.)