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connor-lab / ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
GNU Affero General Public License v3.0
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Unparseable date error #104

Open wtmatlock opened 3 years ago

wtmatlock commented 3 years ago

Hi,

I am trying to run the --illumina pipeline with Nextflow (within the artic-illum-env conda environment) as follows:

nextflow run artic/ncov2019-artic-nf/main.nf \
     --illumina \
     --directory /path/to/reads \
     --outdir /path/to/output \
     --schemeVersion V3 \
     -w /path/to/tmp

But get an Unparseable date: "12:20:18" error in the Nextflow log. I've made sure Nextflow and Java are up to date and working. This error occurs regardless of the input/output.

Thanks,

Will

wtmatlock commented 3 years ago

Running nextflow run artic/ncov2019-artic-nf/main.nf --help also produces Unparseable date: "12:20:18"