A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
i started to use the new protocol developed for rapid sequencing with nanopore which uses new aplicon sizes (1200). I tried to use this bioinformatic analisis with -profile conda and by default the pipeline uses v3 primer schemes and now i need the new version of primer schemes (new aplicon size and primer sequences). Any suggestion how can i adpat the pipeline to this new approach?
Hi!
i started to use the new protocol developed for rapid sequencing with nanopore which uses new aplicon sizes (1200). I tried to use this bioinformatic analisis with -profile conda and by default the pipeline uses v3 primer schemes and now i need the new version of primer schemes (new aplicon size and primer sequences). Any suggestion how can i adpat the pipeline to this new approach?
best wishes