a LEFT primer's name can just contain 'LEFT'

connor-lab / ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

GNU Affero General Public License v3.0

89 stars 88 forks source link

a LEFT primer's name can just contain 'LEFT' #11

Closed dkj closed 4 years ago

dkj commented 4 years ago

and does not have to end in 'LEFT'

dkj commented 4 years ago

I don't know if this impacts ivar's primer clipping

m-bull commented 4 years ago

Thanks - great catch.

m-bull commented 4 years ago

https://github.com/connor-lab/ncov2019-artic-nf/commit/7b7fa638566da6a4b6890731635debf5bef1a5f3 switches to artic-ncov2019's bed instead of my crafty one.