A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
GNU Affero General Public License v3.0
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Adding nCoV-2019.primer.bed for analysis with midnight primer scheme #114
To enable analysis with the midnight primer scheme I am adding nCoV-2019.primer.bed in the midnight folder.
nCoV-2019.primer.bed is needed because of line 12 in artic.nf:
path "${params.schemeDir}/${params.scheme}/${params.schemeVersion}/*.primer.bed" , emit: bed
henningonsbring
commented
2 years ago
To enable analysis with the midnight primer scheme I am adding
nCoV-2019.primer.bedin the midnight folder.nCoV-2019.primer.bedis needed because of line 12 inartic.nf:path "${params.schemeDir}/${params.scheme}/${params.schemeVersion}/*.primer.bed" , emit: bed