Completeness field to report JSON

connor-lab / ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

GNU Affero General Public License v3.0

88 stars 89 forks source link

Completeness field to report JSON #115

Closed bede closed 2 years ago

bede commented 2 years ago

adds top level summary key to report JSON containing the key completeness, which is a 1 d.p. rounded percentage of assembly completeness calculated using totalMissing from nextcladeOutputJson and the hardcoded length of MN908947.3

bede commented 2 years ago

Created by mistake