search

connor-lab / ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
GNU Affero General Public License v3.0
88 stars 89 forks source link

Nanopore update #133

Closed JD2112 closed 9 months ago

JD2112 commented 9 months ago

[x] nanopore container splits into nanopolish and medaka [x] fixed issues with nanopolish, added numpy (1.21.0) and tensorflow (1.14.0) [x] medaka version updated to 1.7.2 [x] --medaka-model added to medaka workflow. [x] README updated [ ] needs container updated on gms-Dockerhub.