A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Updated samtools to 1.10.0 to create bam to cram and cram index in single command.
Cram files are now generated for all bam files irrespective of QC status
Updated samtools to 1.10.0 to create bam to cram and cram index in single command. Cram files are now generated for all bam files irrespective of QC status