A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Just a head's up when you update ivar, when we changed our local version to ivar 1.2.3 conda fails to solve the environment. @mlaszloffy fixed this by changing the samtools and pysam versions:
Just a head's up when you update ivar, when we changed our local version to ivar 1.2.3 conda fails to solve the environment. @mlaszloffy fixed this by changing the samtools and pysam versions: