Open FredDodd6 opened 4 years ago
Good compromise might be to put it behind an option? Code written then, just need to update profile as required later?
@m-bull (sorry for the late reply) - I think the code will have to change to accommodate further change required in ivar...
No probs @dkj. I'm waiting on this too, so anticipating some tweaks pretty soon.
Hello all, with https://github.com/andersen-lab/ivar/commit/29cf79d73a4c0828bdbacf15ff8b12c3b181f896 (resolving https://github.com/andersen-lab/ivar/issues/73), in cases where the insert size is smaller than the read length, the read is treated an unpaired and both forward and reverse primers are trimmed off.
We're on hold with this as it still removes records that we would like to retain (but mark as QCFAIL) for reanalysis.