Closed sthifx closed 3 years ago
Hi Sam - just pushed a fix for this. There's a new option: minReadsArticGuppyPlex
, which will filter samples with fewer fastq records than its value after the artic guppyplex
process. Its set to 10 by default.
Great, thanks for this - I've tested on a sample that previously failed and it works perfectly.
Thanks again!
Hello,
I've recently encountered an issue a couple of times where nanopolish fails. Tracing through the work directory and logs, this seems to occur when
This error doesn't occur if there are no/very few input reads from a sample prior to guppyplex as I understand that the sample wouldn't be put through guppyplex at all in this case.
If this is a real issue, would it be possible to put in a check either after guppyplex, or at the start of artic minion, for empty fastq files?
Apologies if this is down to me rather than an actual issue, and please let me know if you need any more info.
Thanks and all the best,
Sam