A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
GNU Affero General Public License v3.0
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Fix up how samples are searched for using fileglobs #76
Old method was some horrible string concatenation thing, so replace with proper path joining and move out into a module/function. This is handy for finding SARS-CoV-2 samples on mixed sequencing runs by specifying a (list of) prefix strings that identify target samples.
Old method was some horrible string concatenation thing, so replace with proper path joining and move out into a module/function. This is handy for finding SARS-CoV-2 samples on mixed sequencing runs by specifying a (list of) prefix strings that identify target samples.