Open hodeco opened 3 years ago
Hello,
I am getting the same issue when running either the docker or singularity profiles.
My command I am running: ./nextflow run connor-lab/ncov2019-artic-nf -profile docker --illumina --prefix test1 --directory /home/
Thanks
Hello,
I am getting the same issue when running either the docker or singularity profiles.
My command I am running: ./nextflow run connor-lab/ncov2019-artic-nf -profile docker --illumina --prefix test1 --directory /home/
Thanks
@jhill1440 did you manage to solve it?
Hello,
at the very beginning I run into the following problem that I can not find a solution for. Did anybody have the problem before?
Many thanks in advance!
WARN: DSL 2 IS AN EXPERIMENTAL FEATURE UNDER DEVELOPMENT -- SYNTAX MAY CHANGE IN FUTURE RELEASE executor > local (3) [0f/b98f62] process > ncovIllumina:prepareReferenceFiles:articDownloadScheme (https://git... [100%] 1 of 1 ✔ [bc/c2382f] process > ncovIllumina:prepareReferenceFiles:indexReference (nCoV-2019.refere... [100%] 1 of 1 ✔ [- ] process > ncovIllumina:sequenceAnalysis:readTrimming - [- ] process > ncovIllumina:sequenceAnalysis:readMapping - [- ] process > ncovIllumina:sequenceAnalysis:trimPrimerSequences - [- ] process > ncovIllumina:sequenceAnalysis:callVariants - [- ] process > ncovIllumina:sequenceAnalysis:makeConsensus - [- ] process > ncovIllumina:sequenceAnalysis:makeQCCSV - [c1/a1760e] process > ncovIllumina:sequenceAnalysis:writeQCSummaryCSV (210129_test) [100%] 1 of 1 ✔ [- ] process > ncovIllumina:sequenceAnalysis:collateSamples - WARN: Access to undefined parameter
gff
-- Initialise it to a default value eg.params.gff = some_value