A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Thanks for creating this nextflow pipeline! I am just setting it up using conda on an Ubuntu 18.04 workstation and noticed a problem. When I install artic with conda it installs artic 1.2.1 and pyyaml 5.4.1.
But in the ncov2019-artic-nf/environments/nanopore/environment.yml it lists dependencies as artic 1.1.3 and pyyaml 5.3.1. I'm not sure what else would need to be updated in the other scripts but thought I should pass this info on. I downgraded my installs to match the .yaml file and got it to work but was wondering if this could be updated to the latest versions please?
Hello,
Thanks for creating this nextflow pipeline! I am just setting it up using conda on an Ubuntu 18.04 workstation and noticed a problem. When I install artic with conda it installs artic 1.2.1 and pyyaml 5.4.1.
But in the ncov2019-artic-nf/environments/nanopore/environment.yml it lists dependencies as artic 1.1.3 and pyyaml 5.3.1. I'm not sure what else would need to be updated in the other scripts but thought I should pass this info on. I downgraded my installs to match the .yaml file and got it to work but was wondering if this could be updated to the latest versions please?