Closed jan-glx closed 4 years ago
Hey Jan,
thank you for the notification. I updated the the blog-post https://const-ae.name/post/need_for_speed-deseq2/.
Just so that there is no confusion, that blog post had nothing to do yet with glmGamPoi
. The changes that allow you to call glmGamPoi
from DESeq2
were introduced later :)
Best, Constantin
Thanks & thanks for the clarification, I indeed thought they were related & couldn't find a more appropriate place to give feedback on the blog.
On (https://const-ae.name/post/need_for_speed-deseq2/) you recommend installing
devtools::install_github("mikelove/DESeq2@ae7c6bd")
to try the speedups, since your changes have been merged & there have been some bugs in that version you might want to change that toremotes::install_github("mikelove/DESeq2")
.