const-ae proDA issues - Githubissues

const-ae / proDA

Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

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Error in nlminb(), NA/NaN gradient evaluation

#23 Sasimonthakan opened 1 month ago
1
check sigma2 for 0

#22 elena-krismer closed 1 year ago
0
Sigma is 0 when calculating hess_fnc

#21 elena-krismer closed 1 year ago
3
constitutively missing peptides/proteins across "runs"

#20 amackey opened 2 years ago
1
NA dropout_curve parameters

#19 amackey opened 2 years ago
2
fix position/scale typo; streamline logic

#18 amackey closed 2 years ago
1
Pre-filtering steps and requirements per sample

#17 joannawolthuis opened 2 years ago
3
Equivalent of Fold-Change analysis?

#16 joannawolthuis opened 2 years ago
8
quick question: data with no replication

#15 hukai916 closed 2 years ago
4
different results for some proteins depending test used.

#14 wolski opened 2 years ago
0
dist_approx() not stable

#13 hukai916 opened 2 years ago
0
Can proDA be used for paired data?

#12 hukai916 closed 2 years ago
1
Why Intensity over iBAQ?

#11 hukai916 opened 2 years ago
2
Modelling repeated measurements in the presence of missing observations.

#10 wolski closed 3 years ago
10
improve speed of function fit_parameters_loop

#9 tnaake opened 3 years ago
2
speed up lm_pd.fit

#8 tnaake closed 3 years ago
15
Creating heatmap of protein expression across conditions with proDA package

#7 arjun0502 closed 3 years ago
1
import_MaxQuant filter

#6 demar01 opened 3 years ago
1
proDA not on CRAN anymore?

#5 jpquast closed 4 years ago
1
model contrasts

#4 abrozzi closed 4 years ago
6
Replacing 0's by NA's on log transformed data

#3 phauchamps closed 5 years ago
7
Added link to preprint to README, 2nd try

#2 simon-anders closed 5 years ago
1
Added link to preprint to README

#1 simon-anders closed 5 years ago
1