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constantAmateur / SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
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Error in autoestcount #129

Open svaidy88 opened 1 year ago

svaidy88 commented 1 year ago

Thanks for this program and your support! I am somewhat new to R and Seurat. I have been trying to include SoupX in my analysis. However, I am unable to use the autoEstCont function.

This is the code I ran

Sample.data<-Read10X(data.dir ="/Volumes/ScRNAseqdata/Sample/outs/filtered_feature_bc_matrix/") Sample_soup = autoEstCont(Sample.data)

I get the following error:

Error in sc$metaData : $ operator not defined for this S4 class

Thanks again!