I've been trying to load my data into R, however because I received the cellranger output through a dropbox, I don't think the function can establish a connection to read the files. Could someone who has successfully loaded data through this function share with me their file names and what their output looked like for cellranger V3?
Here's my session info and errors:
dataDirs = c('E:/Casey/data/twentyfour_Month_Raw_Data/twenty_four_month_data/raw_data_matrix_included')
scl = load10X(dataDirs, keepDroplets = TRUE)
Loading data for 10X channel Channel1 from E:/Casey/data/twentyfour_Month_Raw_Data/twenty_four_month_data/raw_data_matrix_included
Error in open.connection(file) : cannot open the connection
In addition: Warning message:
In open.connection(file) :
cannot open file 'E:/Casey/data/twentyfour_Month_Raw_Data/twenty_four_month_data/raw_data_matrix_included/raw_feature_bc_matrix/matrix.mtx.gz': No such file or directory
R version 3.6.0 (2019-04-26)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17134)
Hello!
I've been trying to load my data into R, however because I received the cellranger output through a dropbox, I don't think the function can establish a connection to read the files. Could someone who has successfully loaded data through this function share with me their file names and what their output looked like for cellranger V3? Here's my session info and errors:
R version 3.6.0 (2019-04-26) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 17134)
Thanks!