When I run these code:
sc = setContaminationFraction(sc, 0.2)
out = adjustCounts(sc)
I got an error:
Error in sparseMatrix(i = out@i[w] + 1, j = out@j[w] + 1, x = out@x[w], :
(converted from warning) 'giveCsparse' is deprecated; setting repr="T" for you
The packages I used are as below: Seurat(v4.4.0), Soupx(v1.6.2)
I searched this error in the "issues" part, but I didn't find the same error that anyone who have met.
So, is there anything wrong with the version of packages I'm using?
Hi, thanks for developing such a powerful tool.
When I run these code: sc = setContaminationFraction(sc, 0.2) out = adjustCounts(sc)
I got an error: Error in sparseMatrix(i = out@i[w] + 1, j = out@j[w] + 1, x = out@x[w], : (converted from warning) 'giveCsparse' is deprecated; setting repr="T" for you
The packages I used are as below: Seurat(v4.4.0), Soupx(v1.6.2) I searched this error in the "issues" part, but I didn't find the same error that anyone who have met. So, is there anything wrong with the version of packages I'm using?