Error while running strainCells

constantAmateur / SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

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Error while running strainCells #16

Closed shr9st9 closed 4 years ago

shr9st9 commented 5 years ago

Hi,

I run into following error while running strainCells.

Error in if (any(i < 0L)) { : missing value where TRUE/FALSE needed In addition: Warning message: In int2i(as.integer(i), n) : NAs introduced by coercion to integer range

I don't see any NAs introduced in the dataset and it runs fine with smaller datasets.

Can you help in troubleshooting this?

Thanks shristi

constantAmateur commented 4 years ago

Typically errors with NAs indicate an annotation error of some sort, but it is hard to tell without seeing the data. Can you try on the updated version and re-open this ticket if you still have issues?