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constantAmateur / SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
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load count matrix #37

Closed icanwinwyz closed 4 years ago

icanwinwyz commented 4 years ago

Hi,

Thanks for developing such a neat program. For the latest version, you removed the function "SoupChannelList", so how should I load the count expression matrix instead of 10X data from cellranger? Thanks.

constantAmateur commented 4 years ago

The function SoupChannel still exists and can be used to load any expression matrix. SoupChannelList was intended for loading multiple channels simultaneously and has been removed to emphasise that channels should be processed one at a time.