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constantAmateur / SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
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Request for users to specify more ggplot arguments #51

Closed yu-tong-wang closed 3 years ago

yu-tong-wang commented 4 years ago

Hi there,

Thanks for developing SoupX, and it has been a pleasure to try it out so far! Could you allow the users to specify ggplot arguments in the self-defined functions, such as point size, alpha, etc? This would be super helpful!

constantAmateur commented 3 years ago

Thanks for the suggestion, the new version will include more options along these lines. All plot functions return the ggplot object, so many (but not all) of these properties can be changed by modifying the return object. For example by adding a call to scale_fill_manual to the results of plotMarkerMap.