search

constantAmateur / SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
255 stars 34 forks source link

Error in scan(file, nmax = nz, quiet = TRUE, what = list(i = integer(), : scan() richiede 'an integer', invece risulta '146146481146488111' #71

Closed annaeoc closed 3 years ago

annaeoc commented 3 years ago

Hi, I need to get the dgCMatrix from raw_feature_bc_matrix folder . The command below worked for 3 samples already , but for 2 of them I get the following error message. Can you help me to figure out the issue and solve it , please? 10X support did not find any mistake and difference comparing the files that worked and those that did not work.

tod <-Read10X(data.dir= "C:/setwd R single cell/David clinical samples 2020/CTRL1/raw_feature_bc_matrix")

Error in scan(file, nmax = nz, quiet = TRUE, what = list(i = integer(), : scan() richiede 'an integer', invece risulta '146146481146488111'

Thanks a lot in advance, Anna

constantAmateur commented 3 years ago

Hi Anna,

The Read10X function is imported from Seurat and so you should ask the Seurat developers about this error.

annaeoc commented 3 years ago

Hi Matthew, Ok thanks I will.

Il 10 Feb 2021 10:36, "Matthew D. Young" notifications@github.com ha scritto:

[Mail Esterna: prestare attenzione a link e allegati]

Hi Anna,

The Read10X function is imported from Seurat and so you should ask the Seurat developers about this error.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/constantAmateur/SoupX/issues/71#issuecomment-776576200, or unsubscribehttps://github.com/notifications/unsubscribe-auth/APDMY4Q2HVSLN56CHSCS32DS6JHS5ANCNFSM4W6FY33Q.

Questo messaggio e gli eventuali allegati sono riservati al destinatario. Possono contenere informazioni o dati confidenziali o tutelati per legge. Se il messaggio non è destinato a Lei, La preghiamo di cancellare immediatamente sia il messaggio sia gli allegati e di informare il mittente. La ringraziamo per la collaborazione.

This message and any attached files are for the sole use of the recipient named above. It may contain confidential or legally protected data or information. If you have received this message in error, please delete it without making any copies whatsoever and notify the sender. Thank you for your assistance.