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constantAmateur / SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
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Cell suffix #89

Closed ollieeknight closed 2 years ago

ollieeknight commented 2 years ago

Heya,

I want to strip cell name suffixes so that I can match it to CITE-Seq counts. Do you have a way of helping me do this using load10X?

Thanks a million

Ollie

constantAmateur commented 2 years ago

Hi Ollie,

You can specify arguments to be passed to the Seurat function Read10X using the readArgs parameter of load10X. In your case it sounds like what you want is that strip.suffix=TRUE when running Read10X, so you can achieve this by setting:

sc = load10X(usual_parameters_here,readArgs=list(strip.suffix=TRUE))