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constantAmateur / SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
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Add support for cellranger-arc output #91

Closed maxim-h closed 2 years ago

maxim-h commented 2 years ago

I was working on the data from the 10xMultiome protocol (ATAC+Gene expression) produced by cellranger-arc. Unfortunately they changed the layout of some outputs, so the function load10x() couldn't find the clustering anymore. I added a little check for the structure, so that it reads from the correct paths in both cases.

P.S. if you want to do it some other way or just don't want to blow up the contributors list feel free to just copy the changes and commit on your own)

constantAmateur commented 2 years ago

Sorry I missed this until now. Seems like a sensible improvement, I will include it in the next update.

Thank you!