constantinpape cluster_tools issues

constantinpape / cluster_tools

Distributed segmentation for bio-image-analysis

MIT License

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issues

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Avoid deprecated scipy.ndimage sub-namespaces

#49 imagejan closed 6 days ago
0
Always use z5py for zarr files; bump version

#48 constantinpape closed 1 month ago
0
implement metadata checks for downscaling

#47 martinschorb closed 4 months ago
3
`fit_to_roi` not applied

#46 martinschorb opened 5 months ago
0
Pass axis metadata for ome.zarr

#45 constantinpape opened 5 months ago
0
threadpool issue

#44 martinschorb opened 5 months ago
11
dimension slicing error

#43 martinschorb closed 5 months ago
6
support slicing stacks in arbitrary dimension

#42 martinschorb closed 5 months ago
3
Update for elf

#41 constantinpape closed 11 months ago
0
Input data for axon_dendrite_attribution workflow

#40 daniJb opened 1 year ago
0
AssertionError: [30, 256, 256], (16, 128, 128

#39 daniJb opened 1 year ago
2
Replace tail unix command with python impl

#38 constantinpape closed 2 years ago
0
Fix issues with uint8 conversion for float data in CopyVolume

#37 constantinpape opened 2 years ago
0
Warn for unsafe uint8 conversion

#36 constantinpape closed 2 years ago
0
Update copy_volume.py

#35 martinschorb closed 2 years ago
4
wrong kwarg passed on to elf

#34 martinschorb closed 2 years ago
17
Add change from signed int to unsigned int upon copying data

#33 martinschorb closed 2 years ago
12
Fix downscaling with ome zarr metadata format

#32 constantinpape closed 2 years ago
0
Use ome-zarr v04 format and remove bdv.ome.zarr file format

#31 constantinpape closed 2 years ago
0
Advanced inference WIP

#30 constantinpape closed 2 years ago
1
Enable inference with bioimageio models WIP

#29 constantinpape closed 2 years ago
0
Update ilastik prediction workflow

#28 constantinpape closed 2 years ago
0
Fix issues with connected components

#27 constantinpape closed 2 years ago
0
Fix tests for edge features

#26 constantinpape opened 2 years ago
0
Create smaller file for tests

#25 constantinpape closed 2 years ago
0
Add prepare_test function and add github CI

#24 constantinpape closed 2 years ago
0
Support for cloud-based datastores?

#23 j6k4m8 opened 2 years ago
4
Use decomposition solver as default for solve_global

#22 constantinpape opened 3 years ago
0
Block-wise multicut currently does not support halo

#21 constantinpape opened 3 years ago
0
Store slurm ids as string

#20 constantinpape closed 3 years ago
0
Update links for data of LMC publication

#19 constantinpape opened 4 years ago
0
Axon-Dendrite Attribution code

#18 MatthewBM opened 4 years ago
2
Update downscaling workflow to support bdv.n5

#17 constantinpape closed 4 years ago
0
New graph storage

#16 constantinpape closed 4 years ago
0
Implement label multi-set workflow (not fully tested)

#15 constantinpape closed 4 years ago
0
Migrate functionality to elf

#14 constantinpape closed 4 years ago
0
Make 'compression' configurable when creating label-to-block-mapping

#13 wolny closed 4 years ago
0
Add required missing positional argument

#12 wolny closed 5 years ago
0
Segfault fix in the multicut solver

#11 wolny closed 5 years ago
1
Sample data doesn't extract

#10 MatthewBM closed 5 years ago
0
Updated Learning Workflow to work after name changes

#9 snajder-r closed 5 years ago
1
How to run large volumes

#8 MatthewBM closed 5 years ago
21
Inference workflow

#7 constantinpape closed 5 years ago
0
Pipeline has problems with non-contiguous numpy arrays

#6 snajder-r closed 3 years ago
3
Pipeline does not work for non-consecutive superpixels

#5 constantinpape opened 5 years ago
0
Pipeline does not work with HDF5 input

#4 constantinpape opened 5 years ago
0
Tasks do not respect thread limt

#3 constantinpape closed 5 years ago
3
Embl

#2 constantinpape closed 5 years ago
0
New workflow

#1 constantinpape closed 5 years ago
0