Add Plethora dataset - Githubissues

constantinpape / torch-em

Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

MIT License

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Add Plethora dataset #263

Closed anwai98 closed 4 months ago

anwai98 commented 4 months ago

This is the dataset for pleural effusion and lung segmentation in CT scans.

In addtiion, this PR addresses:

Adding the tcia_utils API to install tcia manifest easily. (WIP)

Looks like it's working. I will test it on the entire dataset and finalize this tomorrow.

anwai98 commented 4 months ago

Hi @constantinpape,

As discussed, I added a new functionality which looks at the kwargs if raw_transform or label_transform are incoming, else applies resize trafo as expected. Let me know if you spot somethinng. This is good to go from my side. Thanks!

anwai98 commented 4 months ago

@constantinpape Thanks for the feedback, All the mentions have been taken care of now. GTG from my side!