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constantinpape
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torch-em
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
MIT License
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Add ARCADE dataset
#258
anwai98
opened
4 months ago
0
Add CAMUS dataset
#257
anwai98
closed
4 months ago
1
Add SIIM ACR Pneumothorax dataset
#256
anwai98
closed
4 months ago
4
Add AMOS dataset
#255
anwai98
closed
3 months ago
0
Add ISLES dataset
#254
anwai98
opened
4 months ago
0
Add Covid19 Lung and Infection Segmentation Dataset
#253
anwai98
closed
3 months ago
0
Update torch_em datasets
#252
constantinpape
closed
4 months ago
0
Add ACDC dataset
#251
anwai98
closed
3 months ago
1
Add ISIC dataset
#250
anwai98
closed
3 months ago
1
Add Montgomery dataset
#249
anwai98
closed
4 months ago
1
Add JSRT dataset
#248
anwai98
opened
4 months ago
0
Change instance norm settings in U-Net to avoid boundary artifacts
#247
constantinpape
closed
5 months ago
0
Update ViM-UNet documentation
#246
anwai98
closed
5 months ago
0
Update location to datasets submodule
#245
anwai98
closed
5 months ago
1
Add random colors generator for instance plotting
#244
anwai98
closed
5 months ago
1
Bump bioimageio dependency
#243
constantinpape
closed
5 months ago
0
List of further datasets
#242
constantinpape
opened
5 months ago
3
Minor touch-up updates to torch-em docs
#241
anwai98
closed
5 months ago
0
Make ASEM download more efficient
#240
constantinpape
opened
5 months ago
0
Update links to the vimunet benchmarking
#239
anwai98
closed
5 months ago
1
Bump version
#238
constantinpape
closed
5 months ago
0
Provide simpler installation for ViM-UNet
#237
constantinpape
opened
5 months ago
0
Add ViM-UNet
#236
anwai98
closed
5 months ago
0
Add top-level ViM-UNet description file
#235
anwai98
closed
5 months ago
0
Add documentation on datasets and dataloaders
#234
anwai98
closed
5 months ago
2
Add random colors wrapper for plotting instance segmentation
#233
anwai98
closed
2 weeks ago
1
Enable passing external pbar to trainer
#232
constantinpape
closed
5 months ago
0
Add OrgaSegment dataset
#231
anwai98
closed
4 months ago
1
Set DynamicNuclearNet download default to False
#230
anwai98
closed
5 months ago
0
Request for DistributedDataParallel
#229
sladenheim
opened
6 months ago
1
Add DynamicNuclearNet data - from DeepCell
#228
anwai98
closed
6 months ago
1
Error in _get_kwarg function when handling lists as input
#227
emmateki
opened
6 months ago
0
Add ASEM dataset
#226
anwai98
closed
5 months ago
4
request for more examples
#225
PG-Gu
opened
7 months ago
1
Add Medical Segmentation Decathlon dataset
#224
anwai98
closed
4 months ago
0
Add current_metric while saving checkpoints
#223
anwai98
closed
7 months ago
0
Update UNETR experiments - setting conv transpose as default
#222
anwai98
closed
6 months ago
1
Minor fix to ctc exception message
#221
anwai98
closed
7 months ago
0
Fix missing attribute for dicelosswithlogits
#220
anwai98
closed
7 months ago
1
Minor update to sort encoder outputs
#219
anwai98
closed
7 months ago
1
Save running metric for each checkpoint
#218
anwai98
closed
5 months ago
1
Update UNETR - making the training modular
#217
anwai98
closed
7 months ago
1
Add test set for CTC dataset
#216
anwai98
closed
7 months ago
1
Refactor CTC dataset
#215
anwai98
closed
8 months ago
1
Add CTC dataset
#214
constantinpape
closed
8 months ago
0
Add AutoPET dataset
#213
anwai98
closed
8 months ago
1
Minor fix to NeurIPS CellSeg dataset
#212
anwai98
closed
8 months ago
1
Update UNETR upsampling
#211
anwai98
closed
8 months ago
2
Update ISBI dataset download
#210
anwai98
closed
8 months ago
1
Update grid-search
#209
constantinpape
closed
8 months ago
0
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