Definition of F in script C

contactmodel / COVID19-Japan-Reff

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Definition of F in script C #7

Open snishii opened 4 years ago

snishii commented 4 years ago

F is defined in the stan code in C. Calculating the Rt in Stan.ipynb as follows:

for (k in 1:upper_bound) F_tmp[k] = ReportDelay[upper_bound+1-k]; F = head(F_tmp, K);

F is the delay time from infection to report, Prof. Nishiura said in the lecture on 5/12. Shouldn't conv_report_inc be used instead of ReportDelay in this part?

aakhmetz commented 4 years ago

Yes, that's absolutely correct - Thank you for noticing! It's a strange copy-paste typo, because I have had the correct version in my original program adapted purely to cmdStan. I will correct it in today's update