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cookpa / pipedream

PipeDream - open source neuroimaging pipelines
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Error when call pipedream/dicom2series/dicom2series.sh #4

Open anbai106 opened 8 years ago

anbai106 commented 8 years ago

Hello, I installed pipedream from the config.file that you provided from source code, and run the .sh file: pipedream/dicom2series/dicom2series.sh But I always got same error: ./dependencies.sh: line 13: /Users/junhao.wen/Software/gdcm/gdcmbin/bin/gdcmdump: No such file or directory ./dependencies.sh: line 15: gdcmdump: command not found Cannot find GDCM executables

I dont know if I made some wrong configuration in the config file, and also I am not so familiar with cmake, I just followed the steps to install GDCM from source code, and without error...

Can you help me???? Thanks in advance.

cookpa commented 8 years ago

Looks like gdcmdump doesn't exist.

You might need to enable GDCM_BUILD_APPLICATIONS in the GDCM build.

anbai106 commented 8 years ago

Ok, it seems that this option is OFF, i will try it again Thanks

anbai106 commented 8 years ago

Hello, right now, it works for gdcm, but I think I have the problem for the configuration file:pipedream_config.sh, I changed it to txt file and attach here, when I use neurobattery, it gives me some confiuration error. Thanks in advance config.txt