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cooperative-computing-lab / makeflow-examples

Example workflows for the Makeflow workflow system.
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BWA-GATK Data Source #30

Open nhazekam opened 5 years ago

nhazekam commented 5 years ago

Update the BWA-GATK examples data source instructions and attributions. The data that was used in this example was previously in pre-publication usage, but has been published/released. We need instructions on how to pull and format the data for the included Makeflow.

Necessary Information:

Analysis Article: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3765-8

Cite as: Konar et al. (2017)

Relevant Raw data source: These sequences and their associated accession numbers are also included in the additional files of this article. ddRADseq sequences containing the mapped SNPs are deposited to the NCBI Sequence Read Archive (SRA) under these identifiers Accession: PRJNA379162 ID: 379162 (https://www.ncbi.nlm.nih.gov/bioproject/379162).

cplayer commented 4 years ago

Hi, could you leave a simple tutorial for using these sample datas?

balis commented 3 years ago

Hi! Any news on this? I'd love to test this workflow.

btovar commented 3 years ago

Thanks for your interest! We are figuring out which data can be shared, and how to put it in the correct format.