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cooperlab / TCGAIntegrator

Python utilities for building integrated views of TCGA data.
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check disease type before downloading #3

Closed coco90417 closed 3 years ago

cooperlab commented 8 years ago

I think we can fix this by calling firehose_get -c or -cohorts to retrieve a list of available disease cohorts. This can then be parsed into a list using split. This list should be fairly static but I prefer this approach to hardcoding them in.

coco90417 commented 8 years ago

I agree. Then I will update this correspondingly. Thanks!

On Jun 6, 2016, at 12:14 PM, Lee Cooper notifications@github.com wrote:

I think we can fix this by calling firehose_get -c or -cohorts to retrieve a list of available disease cohorts. This can then be parsed into a list using split. This list should be fairly static but I prefer this approach to hardcoding them in.

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