[CORL-3020]: update to pnpm

What does this PR do?

These changes add fixes to address an issue with scripts not running everything as expected to remove npm-run-all and just use pnpm, plus updates how some args are passed through.

These changes update to use pnpm instead of npm as Coral's package manager.

To achieve this, it was necessary to:

Update scripts to use pnpm
Install some dependencies that weren't directly installed before
Update transformIgnorePatterns in jest config to include .pnpm symlink path (See https://jestjs.io/docs/configuration#transformignorepatterns-arraystring and its Tip section)

In this PR, we also override protobufjs in our server package.json to address a security update needed there.

These changes will impact:

[ ] commenters
[ ] moderators
[ ] admins
[x] developers

What changes to the GraphQL/Database Schema does this PR introduce?

none

Does this PR introduce any new environment variables or feature flags?

If any indexes were added, were they added to `INDEXES.md`?

n/a

How do I test this PR?

First, you'll need to get set up with pnpm. You can run npm install -g pnpm@8.14.3 Then you'll want to clear your node modules. Run sh scripts/clear-node_modules.sh Then you can run sh scripts/pnpm-ci.sh to install from the new pnpm-lock.yaml. (This is equivalent to package-lock.json) Then you can do all the usual things. pnpm run watch inside client and server to run Coral (Might need to run sh scripts/build.sh first if you see linting errors) pnpm run lint inside client and server to check linting (or sh scripts/lint.sh to run linting everywhere) pnpm run test inside client and server to check tests

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coralproject / talk