Is there a possibility to obtain an output file containing the top cis variant-gene associations, similar to the gene_table_output but including not only the molecular trait, but also the calculated variant ID, beta (slope), and standard error values? Something akin to what tensorQTL offers with the permutation option?
Is there a possibility to obtain an output file containing the top cis variant-gene associations, similar to the gene_table_output but including not only the molecular trait, but also the calculated variant ID, beta (slope), and standard error values? Something akin to what tensorQTL offers with the permutation option?