Closed agdenadel closed 6 months ago
When using CHOIR with a Seurat object from Seurat v5 I had this error
Error in .getMatrix.Seurat(object, use_matrix, use_assay, use_slot, use_features, : object 'seurat_object' not found Calls: runDimReduction -> .getMatrix -> .getMatrix.Seurat
I noticed that seurat_object had never been defined and object was the name of the seurat object in the function call.
seurat_object
object
Thanks! Caught this as well--it's been fixed in the dev branch, commit 0c7272e, so I'll close this pull request. Will be fixed in the main branch soon.
When using CHOIR with a Seurat object from Seurat v5 I had this error
I noticed that
seurat_object
had never been defined andobject
was the name of the seurat object in the function call.