Closed inofechm closed 1 month ago
Thanks! Caught this as well--it's been fixed in the dev branch, commit https://github.com/corceslab/CHOIR/commit/0c7272e02f26ba6a5360ed07d6f490165057192b Will be fixed in the main branch soon!
You can install the dev branch as follows:
remotes::install_github("corceslab/CHOIR", ref = "dev", repos = BiocManager::repositories(), upgrade = "never")
# To unload a package and reload
detach("package:CHOIR", unload = TRUE)
library(CHOIR)
Thank you!
Hi,
Congrats on the preprint! I am trying to use CHOIR and ran into a minor error. If I run the CHOIR function on an object titled 'seur_obj' I get the following error:
seur_obj <- CHOIR(object= seur_obj, n_cores = 4)
but if I change the name to seurat_object it works
I think this may be due to lines 124-126 in HelperUtils.R referring to seurat_object instead of object.
Best, Ido