Open velten-lab opened 1 week ago
When running CHOIR on a Seurat object, the above error appears in recent versions of Seurat / R e.g. R 4.4.1 , spatstat.explore_3.3-3 , Seurat_5.1.0
There is apparently a github repo that describes how to adapt packages to the new versions of spatstat, https://github.com/rubak/spatstat.revdep
Edit: A workaround that currently works is to restart R and, before loading any other package, run
require(groundhog) groundhog.library("spatstat.explore", "2024-04-28")
Thank you for looking into it!
When running CHOIR on a Seurat object, the above error appears in recent versions of Seurat / R e.g. R 4.4.1 , spatstat.explore_3.3-3 , Seurat_5.1.0
There is apparently a github repo that describes how to adapt packages to the new versions of spatstat, https://github.com/rubak/spatstat.revdep
Edit: A workaround that currently works is to restart R and, before loading any other package, run
Thank you for looking into it!