Closed Carolina-Toste closed 6 months ago
Hi! Glad you like the package!
This is a good catch—I've made some changes to plotCHOIR()
to accommodate more of the Seurat::DimPlot
parameters like split.by
in a new branch: 'dev_seurat_compatibility'.
Would you try reinstalling CHOIR with this branch, and let me know if split.by
works for you?
remotes::install_github("corceslab/CHOIR", ref = "dev_seurat_compatibility", repos = BiocManager::repositories(), upgrade = "never")
# To unload a package and reload
detach("package:CHOIR", unload = TRUE)
library(CHOIR)
Hi! I'm closing this issue for now, but please feel free to reply here if you have any additional issues and I'll reopen it.
Hi there,
Thank you so much for this package, it's really great . I've been testing it on my data and I have successfully plotted the CHOIR clusters umap plot. I wanted to try to plot these clusters split.by genotype, but that functionality seems not to be supported(unless I'm somehow made a mistake). Could you let me know if by any chance this will change in the future? I did manage to get the plot I wanted with