package ‘VGAM’ is not available (for R version 3.6.1)

cortes-ciriano-lab / SComatic

A tool for detecting somatic variants in single cell data

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package ‘VGAM’ is not available (for R version 3.6.1) #25

Closed FionaMoon closed 10 months ago

FionaMoon commented 11 months ago

Hi all, I can't install the dependency 'VAGM' . How can I solve this problem?

Francesc-Muyas commented 10 months ago

Dear user, Could you please try to do this in R?

package_url <- "https://cran.r-project.org/src/contrib/Archive/VGAM/VGAM_1.1-7.tar.gz"
install.packages(package_url, repos=NULL, type="source")

In any case, R (and this package) is only used in the BetaBinEstimation.py script, so unless you need this step for re-calculating the Beta-binomial parameters, you can go ahead with your analysis.

Cheers, Fran