If the Scomatic could provide the variant allele frequency of unique cell

cortes-ciriano-lab / SComatic

A tool for detecting somatic variants in single cell data

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If the Scomatic could provide the variant allele frequency of unique cell #56

Open luhuan93 opened 3 months ago

luhuan93 commented 3 months ago

Thank you for making this wonderful tool. I have used this pipeline and wanted to use the output for clone analysis by using software like Cardelino. I found there was no information about the variant allele frequency of unique cell in the output of SingleCellGenotype.py. If I can calculate this from the other output of Scomatic ? Thanks very much!

Best wishes

Huan