cortes-ciriano-lab / SComatic

A tool for detecting somatic variants in single cell data
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Failure of installing pybedtools and rpy2 #70

Open LiuCanidk opened 3 weeks ago

LiuCanidk commented 3 weeks ago

Thanks for developing this nice tool After running these commands: mamba create -n SComatic -y python=3.7 r-base=3.6.1 samtools datamash bedtools mamba activate SComatic pip install -r requirements.txt I encountered an error about building wheels on the requirements of SComatic: pybedtools and rpy2: image image

I followed the instruction of creating a new conda environment with exactly the code provided in the github page, but found this error. Could you please tell me why this occur and how should I do to install SComatic properly?

I then tried install rpy2=2.9.4 via conda, it works but still cannot install pybedtools

Any advice or suggestions would be greatly appreciated! Thanks in advance