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cortes-ciriano-lab / SComatic

A tool for detecting somatic variants in single cell data
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Output total number of reads covering the site? #8

Closed cnk113 closed 1 year ago

cnk113 commented 1 year ago

Hello,

I was wondering in the final step (SingleCellGenotype.py), would it be also possible to get the total number of reads covering the site (mutant or otherwise)? The output of this would amenable with cardelino's two input matrices.

Thanks, Chang

Francesc-Muyas commented 1 year ago

Dear user, So far, it is not on our short-term TODO list, but we will consider it for future updates.

Thanks, Fran