Open waltergallegog opened 1 year ago
Hi all, exact same issue here
@MartinezRuiz-Carlos if it helps, I was able to run savana after downgrading the scikit-learn version to 1.2.2 in my conda env.
Ah nice, I am trying to just run it on a manual install, seems to be doing allright so far, but will give it a go if I get into the same issue, thanks!
Hi there, thanks @waltergallegog for the detailed description of this issue. I've opened a pull request on the bioconda-recipes repo that should pin scikit-learn to 1.2.x and prevent conda/mamba from installing 1.3.0 or greater. I'll update here once it's been merged and I've tested that it works correctly.
Hello,
Using the latest version from bioconda, I'm getting the error
From https://discuss.streamlit.io/t/valueerror-node-array-from-the-pickle-has-an-incompatible-dtype/46682/4 it seems the error could be due to incompatible scikit-learn versions.
The following log seems to agree with this idea:
I installed savana using mamba and the bioconda channel:
The current requirement in the bioconda package recepie for savana is:
Perhaps the recipe needs to be updated, or the ont model re-pickled with the new version of scikit-learn. Thanks Walter.
Here is the full log: