Closed waltergallegog closed 4 weeks ago
Hi there,
I suspect this has something to do with the fact that this variant falls on a short alternate contig. I wasn't able to replicate this issue with the latest release of SAVANA, so am closing for now, but feel free to re-open the issue if you still encounter it in the latest version of SAVANA.
All the best, Hillary
Hi, during some tests with SAVANA I got the following variant:
Which has position 0. AFAIK, a value of zero for the POS field in VCF should not be possible, as VCF is 1-based. Perhaps SAVANA is calculating the position zero based (for some variant types) ?
BR Walter