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cortes-ciriano-lab / savana

Somatic structural variant caller for long-read data
Apache License 2.0
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Should the input bam be phased? #45

Closed ywzhang071394 closed 1 month ago

ywzhang071394 commented 1 month ago

Hi,

I was surprised to see your updates on the inclusion of the phased VCF and the Pacbio option. Thank you for your effort! However, I was still confused of the input bam file? If I specificy the phased VCF file when run SAVANA, should I input the phased bam or unphased bam?

Thanks,

ywzhang071394 commented 1 month ago

Just got the answer from your bioRxiv paper.