I was surprised to see your updates on the inclusion of the phased VCF and the Pacbio option.
Thank you for your effort!
However, I was still confused of the input bam file? If I specificy the phased VCF file when run SAVANA, should I input the phased bam or unphased bam?
Hi,
I was surprised to see your updates on the inclusion of the phased VCF and the Pacbio option. Thank you for your effort! However, I was still confused of the input bam file? If I specificy the phased VCF file when run SAVANA, should I input the phased bam or unphased bam?
Thanks,