List Matlab toolboxes needed for Kilosort in Readme

cortex-lab / KiloSort

GPU code for spike sorting

GNU General Public License v2.0

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List Matlab toolboxes needed for Kilosort in Readme #168

Open oliche opened 5 years ago

oliche commented 5 years ago

Hello, Could there be a round up of the dependencies needed to run Kilosort in the readme ? So far I can see Statistics and Machine Learning Toolbox and Parallel Computing Toolbox, but there could be more.

Best Regards

marius10p commented 5 years ago

Which functions are from the Statistics and Machine Learning Toolbox? I think we are also using signal processing for filtering the data.

oliche commented 5 years ago

make_eMouseData(fpath, useGPU); To use 'geornd', the following product must be licensed, installed, and enabled: Statistics and Machine Learning Toolbox

Error in make_eMouseData (line 44) dspks = int64(geornd(1/(fs/fr(j)), ceil(2fr(j)t_record),1));

marius10p commented 5 years ago

I see. You can replace those random numbers with any other positive distribution on the integers as long as you keep mean firing rates roughly the same.