search

cortex-lab / KiloSort

GPU code for spike sorting
GNU General Public License v2.0
175 stars 100 forks source link

Isolating Spikes #195

Open aproca opened 5 years ago

aproca commented 5 years ago

How I would go about isolating individual sorted spikes of the real data (including its waveform, unit, and channel), rather than the templates or the average spikes. Is this in a specific .npy file(s)?

Thanks!

MarineChap commented 4 years ago

Dear, I am looking for the same thing here. @aproca Did you found an easy way to do it ? :) Thanks

PhantomSpike commented 4 years ago

Hi,

You can try this https://djoshea.github.io/neuropixel-utils/

You need to access the raw .bin file and get them from there. The link above should have enough info and worked examples.

MarineChap commented 4 years ago

Aaah yes, I remember now seeing this during my research... But I don't have access to Matlab. So, I am only working in python with files given as output from kilosort. Thanks you. I will try to find a solution through these examples.