Closed linussun closed 3 years ago
Not the right repository to post in, but thanks for bringing this up. I think we'll make a "kilosort" subfolder.
It looks like this was fixed in 3.0. I also added the mkdir('kilosort25') line and appended this directory to rootZ before rez2Phy in main_kilosort.m.
Thank you.
This issue is a warning to anyone who expects .npy files in the output folder to be preserved (e.g. Open Ephys users). To avoid this be sure to change the default output directory to an EMPTY directory when using the KS2.5 GUI. I can understand if the developers don't wish to change behavior of how data is written to the output directory. However, the current default behavior of the GUI may lead to a rude awaking to OEP users who will lose primary data.
Steps to reproduce
Current behaviour (bug)
Expected behaviour The OEP timestamps.npy, synchronized_timestamps.npy or really any .npy files that are not generated by KS2.5 are left alone. I assume a 'rm *.npy' command is being run in the processing stage by Kilosort 2.5.
Proposed solutions: