cortex-lab / KiloSort

GPU code for spike sorting
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Cant open one recording in Phy #257

Open gregvoidman opened 2 years ago

gregvoidman commented 2 years ago

Hi,

I'm getting an error opening a recording in Phy that I have previously been able to open and curate.

09:59:08.919 [W] model:592 Unreferenced clusters found in templates (generally not a problem) 09:59:09.672 [W] model:614 Unreferenced clusters found in spike_clusters (generally not a problem) 09:59:10.132 [W] model:656 Skipping spike waveforms that do not exist, they will be extracted on the fly from the raw data as needed. 09:59:10.524 [E] init:62 An error has occurred (KeyError): 0 Traceback (most recent call last): File "/Users/AdamHarris/miniconda3/envs/phy/bin/phy", line 8, in sys.exit(phycli()) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/click/core.py", line 1128, in call return self.main(args, kwargs) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/click/core.py", line 1053, in main rv = self.invoke(ctx) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/click/core.py", line 1659, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/click/core.py", line 1395, in invoke return ctx.invoke(self.callback, ctx.params) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/click/core.py", line 754, in invoke return __callback(args, kwargs) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/click/decorators.py", line 26, in new_func return f(get_current_context(), *args, kwargs) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/phy/apps/init.py", line 159, in cli_template_gui template_gui(params_path, kwargs) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/phy/apps/template/gui.py", line 217, in template_gui controller = TemplateController(model=model, dir_path=dir_path, *kwargs) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/phy/apps/base.py", line 470, in init super(TemplateMixin, self).init(args, kwargs) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/phy/apps/base.py", line 926, in init self._set_supervisor() File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/phy/apps/template/gui.py", line 95, in _set_supervisor super(TemplateController, self)._set_supervisor() File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/phy/apps/base.py", line 1017, in _set_supervisor context=self.context, File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/phy/cluster/supervisor.py", line 637, in init spc = context.load('spikes_per_cluster') if context else None File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/phy/utils/context.py", line 208, in load return load_pickle(path) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/phylib/utils/_misc.py", line 144, in load_pickle return load(path) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/joblib/numpy_pickle.py", line 587, in load obj = _unpickle(fobj, filename, mmap_mode) File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/site-packages/joblib/numpy_pickle.py", line 506, in _unpickle obj = unpickler.load() File "/Users/AdamHarris/miniconda3/envs/phy/lib/python3.6/pickle.py", line 1050, in load dispatchkey[0] KeyError: 0

Any ideas what the issue could be/how to resolve it? I am able to open other recordings without issue.

Many thanks!

ChauhanT commented 9 months ago

Hi @gregvoidman , I am getting similar errors. Were you able to fix this ? If so, any tips ?

Thank you!